Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816377.1_cds_XP_016498788.1_12773
CDS Infomation

[gene=LOC107817469] [db_xref=GeneID:107817469] [protein=carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2] [protein_id=XP_016498788.1] [location=complement(join(409..438,1384..1495,2102..2353,2616..2717,2801..2918,3537..3675,7367..7551,8316..8426,8684..8746,8909..9008,9796..9906))] [gbkey=CDS]
Sequence

ATGATTCATGGCTTGCGCATTAAAGATGGAAAAGCAACTTATGTGTCACGTTATGTGAGG
ACATCACGTCTAAAGCAAGAAGAGTTCTTTGGAGGAGCTAAGTTTATGAAGATTGGAGAT
CTTAAAGGGTTGTTCGGTCTGTTCACCGTTTATATGCAAATGCTCCGAGCAAAGCTGAAA
GTATTGGACATCACCTATGGAAATGGAACAGCTAATACTGCTCTAGTATATCACCATGGG
AAGCTTTTGGCACTTTCAGAGGCTGATAAACCTTATGCACTTAAAGTTCTGGAGGATGGA
GATCTTCAAACACTCGGCATGCTGGATTATGACAAAAGGTTGGCGCATTCCTTCACTGCC
CATCCAAAAGTTGACCCTGTAACTGGTGAGATGTTTACCTTTGGCTACTCTCACAACCCA
CCTTATATCACTTATAGGGTTATATCAAAGGATGGAATCATGCAGGATCCGGTCTCAATA
ACAATACCAGAGCCTGTCATGATGCATGATTTTGCTATAACTGAAAATTATGCAGTTATG
ATGGATCTCCCTTTGTGTTTCCGACCGAAGGAAATGGTGAAAAATAATCAGCTGGCTTTT
TCCTTCGATGTTACTAAAAAGGCTCGATTTGGTGTCCTCCCACGATATGCGAAGAGTGAG
GCCCTAATCAAGTGGTTCGAGCTTCCTAATTGCTTCATATTTCACAATGCCAATGCTTGG
GAGGAGGGAGATGAAGTCGTGTTGATCACCTGCCGCCTTCAAAATCCAAACCTAGACATG
GTCAATGGAGTTGTTAAAGAAAAGCTTGAGAATTTCACCAATGAGCTATATGAGATGAGA
TTTAATATGAAGAGTGGTGCAGCTTCACAGAAGAAACTATCGGAGTCTGCTGTTGATTTT
CCACGGATCAACGAGAATTACACTGGCAGGAAGCAGCGGTATGTATATGGAACCACTTTG
GACAGCATTGCCAAGGTAACTGGAGTCATCAAATTTGATTTGCATGCTGAACCAGAGACT
GGAAAAGCACAGCTTGAAGTTGGAGGAAATGTTCAAGGCATCTTTGATCTAGGATCCGGC
AGGTTTGGTTCGGAGGCTGTATTTGTTCCGCGTCAGCCTGGGACAGAAAGTGAAGAGGAC
GATGGCTACTTGATATTCTTCGTACATGATGAGAACACCGGAAAGTCAGCTGTGAATGTA
ATTGATGCAAAAACAATGTCAACAGAACCTGTGGCAGTGGTTGAATTACCCAAAAGAGTT
CCTTATGGATTCCATGCTTTTTTTGTCACTGAGGAACAAATTCAAGAACAAGCCAAACTG
TGA

Peptide Sequence

PEP ID

XP_016498788.1
PEP Infomation

PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nicotiana tabacum]
Sequence

MIHGLRIKDGKATYVSRYVRTSRLKQEEFFGGAKFMKIGDLKGLFGLFTVYMQMLRAKLK
VLDITYGNGTANTALVYHHGKLLALSEADKPYALKVLEDGDLQTLGMLDYDKRLAHSFTA
HPKVDPVTGEMFTFGYSHNPPYITYRVISKDGIMQDPVSITIPEPVMMHDFAITENYAVM
MDLPLCFRPKEMVKNNQLAFSFDVTKKARFGVLPRYAKSEALIKWFELPNCFIFHNANAW
EEGDEVVLITCRLQNPNLDMVNGVVKEKLENFTNELYEMRFNMKSGAASQKKLSESAVDF
PRINENYTGRKQRYVYGTTLDSIAKVTGVIKFDLHAEPETGKAQLEVGGNVQGIFDLGSG
RFGSEAVFVPRQPGTESEEDDGYLIFFVHDENTGKSAVNVIDAKTMSTEPVAVVELPKRV
PYGFHAFFVTEEQIQEQAKL

Transcript Sequence

Gene sequence data has not been registered.